Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 NOC2LP1-201ENST00000450578 752 ntBASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 IQSEC3P1-201ENST00000538799 536 ntBASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 AC138894.2-201ENST00000602838 371 ntBASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 AC144831.1-201ENST00000573312 2656 ntBASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RNFT1Q5M7Z0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AP002414.2-201ENST00000591780 3365 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AL583805.1-201ENST00000391389 531 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 RPSAP15-201ENST00000448168 861 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 RN7SL181P-201ENST00000462921 277 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AC008267.1-201ENST00000474858 1069 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AC103810.10-201ENST00000606504 343 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 AL022334.2-201ENST00000610000 484 ntBASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
RNFT1Q5M7Z0 YRDCP1-201ENST00000621419 643 ntBASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms