Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 SALL4P5-201ENST00000419001 1760 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC13.2□□□□□ -0.3
SPTA1P02549 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 FOXN3-AS2-201ENST00000554071 1262 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
SPTA1P02549 AL160191.2-201ENST00000603975 601 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 BX088702.1-201ENST00000610784 235 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.2□□□□□ -0.3
SPTA1P02549 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 TMBIM7P-202ENST00000641474 1516 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 SPATA18-201ENST00000295213 4396 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 MIR1301-201ENST00000408518 82 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC13.19□□□□□ -0.3
SPTA1P02549 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 GOLGA2P7-209ENST00000560408 745 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 AC009145.4-201ENST00000625119 1294 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 AC084018.2-201ENST00000613093 2607 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 PARVA-201ENST00000334956 4458 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 RN7SL23P-201ENST00000484055 275 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 NAV1-210ENST00000593583 726 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SPTA1P02549 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 NKILA-202ENST00000614771 2598 ntBASIC13.19□□□□□ -0.3
SPTA1P02549 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SPTA1P02549 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.19□□□□□ -0.3
SPTA1P02549 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.18□□□□□ -0.3
SPTA1P02549 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
SPTA1P02549 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SPTA1P02549 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SPTA1P02549 CSNK1G2P1-201ENST00000442675 955 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms