Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL008638.5-201ENST00000623814 1298 ntBASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 LINC00552-201ENST00000625151 2579 ntBASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 KRT8P29-201ENST00000420409 1371 ntBASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AC139712.1-201ENST00000378256 1875 ntBASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AL122018.1-201ENST00000446607 2310 ntBASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 TUBB8P8-201ENST00000458717 1058 ntBASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AL022328.3-201ENST00000607943 679 ntBASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AC007663.3-201ENST00000609632 465 ntBASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
TRIM39Q9HCM9 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AL354702.1-201ENST00000442006 1960 ntBASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AL590440.2-201ENST00000641973 1595 ntBASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 AC138969.2-201ENST00000532739 9932 ntBASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
TRIM39Q9HCM9 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms