Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 MYL6-215ENST00000549566 685 ntTSL 2 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 KRT8P2-201ENST00000556193 944 ntBASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AC006986.1-201ENST00000612764 241 ntBASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AL137077.2-201ENST00000635124 1608 ntBASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 OR7E115P-201ENST00000382617 1024 ntBASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 IFNWP2-201ENST00000431203 580 ntBASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 RN7SL375P-201ENST00000492442 298 ntBASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AC120498.7-201ENST00000562876 330 ntBASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AC124068.2-201ENST00000569473 1109 ntBASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SNORD3B-1-201ENST00000577988 758 ntBASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.15■□□□□ 0.34
SMC1BQ8NDV3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SMC1BQ8NDV3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SMC1BQ8NDV3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SMC1BQ8NDV3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms