Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SOX3P41225 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.87□□□□□ -0.19
SOX3P41225 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SOX3P41225 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 AC089987.1-201ENST00000551654 2209 ntBASIC13.86□□□□□ -0.19
SOX3P41225 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 CICP20-201ENST00000443330 2801 ntBASIC13.86□□□□□ -0.19
SOX3P41225 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 BRWD1P1-201ENST00000401091 371 ntBASIC13.86□□□□□ -0.19
SOX3P41225 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 CNN2P10-201ENST00000443067 918 ntBASIC13.86□□□□□ -0.19
SOX3P41225 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 RPL13AP20-201ENST00000459725 609 ntBASIC13.86□□□□□ -0.19
SOX3P41225 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 FTLP10-202ENST00000505798 471 ntBASIC13.86□□□□□ -0.19
SOX3P41225 AL391280.1-201ENST00000506969 1062 ntBASIC13.86□□□□□ -0.19
SOX3P41225 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.86□□□□□ -0.19
SOX3P41225 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
SOX3P41225 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 AC106820.3-201ENST00000561653 397 ntBASIC13.86□□□□□ -0.19
SOX3P41225 AP006547.1-201ENST00000563435 692 ntBASIC13.86□□□□□ -0.19
SOX3P41225 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.86□□□□□ -0.19
SOX3P41225 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.86□□□□□ -0.19
SOX3P41225 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.86□□□□□ -0.19
SOX3P41225 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX3P41225 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX3P41225 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
SOX3P41225 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SOX3P41225 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX3P41225 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX3P41225 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms