Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.41■□□□□ 0.06
BDNFP23560 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 AC018629.1-201ENST00000623381 1736 ntBASIC15.41■□□□□ 0.06
BDNFP23560 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
BDNFP23560 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.41■□□□□ 0.06
BDNFP23560 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 AC022447.6-201ENST00000515522 438 ntBASIC15.41■□□□□ 0.06
BDNFP23560 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.41■□□□□ 0.06
BDNFP23560 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.41■□□□□ 0.06
BDNFP23560 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 AC027237.1-201ENST00000560942 655 ntBASIC15.41■□□□□ 0.06
BDNFP23560 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.41■□□□□ 0.06
BDNFP23560 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
BDNFP23560 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
BDNFP23560 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 NAP1L6-202ENST00000641404 1222 ntBASIC15.41■□□□□ 0.06
BDNFP23560 AC138627.1-207ENST00000641560 1006 ntBASIC15.41■□□□□ 0.06
BDNFP23560 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.41■□□□□ 0.06
BDNFP23560 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
BDNFP23560 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
BDNFP23560 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.41■□□□□ 0.06
BDNFP23560 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.41■□□□□ 0.06
BDNFP23560 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
BDNFP23560 AC215219.1-201ENST00000400706 1817 ntBASIC15.4■□□□□ 0.06
BDNFP23560 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 AC145098.2-201ENST00000623593 3026 ntBASIC15.4■□□□□ 0.06
BDNFP23560 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
BDNFP23560 AL662890.1-201ENST00000396818 632 ntBASIC15.4■□□□□ 0.06
BDNFP23560 KRT18P36-201ENST00000411618 1276 ntBASIC15.4■□□□□ 0.06
BDNFP23560 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.4■□□□□ 0.06
BDNFP23560 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
BDNFP23560 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.4■□□□□ 0.06
BDNFP23560 AL157813.1-201ENST00000612996 587 ntBASIC15.4■□□□□ 0.06
BDNFP23560 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.4■□□□□ 0.06
BDNFP23560 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.4■□□□□ 0.06
BDNFP23560 AC113367.3-201ENST00000508316 1912 ntBASIC15.4■□□□□ 0.06
BDNFP23560 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.4■□□□□ 0.06
BDNFP23560 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.4■□□□□ 0.06
BDNFP23560 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
BDNFP23560 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
BDNFP23560 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BDNFP23560 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
BDNFP23560 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
BDNFP23560 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.39■□□□□ 0.05
BDNFP23560 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BDNFP23560 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BDNFP23560 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BDNFP23560 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.39■□□□□ 0.05
BDNFP23560 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
BDNFP23560 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms