Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.11□□□□□ -0.31
CNOT4O95628 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.11□□□□□ -0.31
CNOT4O95628 AL358472.3-201ENST00000608147 415 ntBASIC13.11□□□□□ -0.31
CNOT4O95628 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.11□□□□□ -0.31
CNOT4O95628 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.11□□□□□ -0.31
CNOT4O95628 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CNOT4O95628 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.11□□□□□ -0.31
CNOT4O95628 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CNOT4O95628 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.11□□□□□ -0.31
CNOT4O95628 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.11□□□□□ -0.31
CNOT4O95628 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CNOT4O95628 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CNOT4O95628 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 AL354877.1-201ENST00000424412 413 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 AL591846.1-201ENST00000451736 433 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.1□□□□□ -0.31
CNOT4O95628 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
CNOT4O95628 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 AL021578.1-201ENST00000613646 709 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 AL136301.1-201ENST00000615830 422 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 AL023803.2-201ENST00000620080 638 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 AP001002.3-201ENST00000623482 206 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 SHC1P1-201ENST00000425230 1745 ntBASIC13.1□□□□□ -0.31
CNOT4O95628 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.1□□□□□ -0.31
CNOT4O95628 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.1□□□□□ -0.31
CNOT4O95628 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CNOT4O95628 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CNOT4O95628 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CNOT4O95628 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CNOT4O95628 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.09□□□□□ -0.31
CNOT4O95628 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CNOT4O95628 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.09□□□□□ -0.31
CNOT4O95628 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.09□□□□□ -0.31
CNOT4O95628 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CNOT4O95628 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.09□□□□□ -0.31
CNOT4O95628 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.09□□□□□ -0.31
CNOT4O95628 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CNOT4O95628 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
CNOT4O95628 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms