Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 LINC02486-201ENST00000604157 3000 ntBASIC10.77□□□□□ -0.69
SMKR1H3BMG3 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AC005237.2-201ENST00000434368 219 ntBASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC10.76□□□□□ -0.69
SMKR1H3BMG3 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms