Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 MIR770-201ENST00000390219 98 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 MEP1AP4-201ENST00000423244 1087 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 AL442647.2-201ENST00000429864 857 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 AC007969.1-201ENST00000433675 447 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.7■□□□□ 0.26
ERCC4Q92889 CLUHP6-201ENST00000580789 941 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ERCC4Q92889 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ERCC4Q92889 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
ERCC4Q92889 FAM90A12P-201ENST00000519497 2375 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 FAM90A24P-201ENST00000520792 2369 ntBASIC16.7■□□□□ 0.26
ERCC4Q92889 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.7■□□□□ 0.26
ERCC4Q92889 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.69■□□□□ 0.26
ERCC4Q92889 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ERCC4Q92889 AC007541.1-201ENST00000570282 1469 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 RN7SKP230-201ENST00000365642 335 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 SOCS2P1-201ENST00000417727 557 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 GIMAP3P-201ENST00000495150 836 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.69■□□□□ 0.26
ERCC4Q92889 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.69■□□□□ 0.26
ERCC4Q92889 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.69■□□□□ 0.26
ERCC4Q92889 CTBP2P3-201ENST00000585629 1255 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 AL132655.2-201ENST00000596276 594 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 AC099568.2-201ENST00000609194 695 ntBASIC16.69■□□□□ 0.26
ERCC4Q92889 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
ERCC4Q92889 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ERCC4Q92889 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ERCC4Q92889 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.69■□□□□ 0.26
ERCC4Q92889 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.69■□□□□ 0.26
ERCC4Q92889 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.69■□□□□ 0.26
ERCC4Q92889 APP-205ENST00000358918 2366 ntTSL 5 BASIC16.69■□□□□ 0.26
ERCC4Q92889 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ERCC4Q92889 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.68■□□□□ 0.26
ERCC4Q92889 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.68■□□□□ 0.26
ERCC4Q92889 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ERCC4Q92889 CICP8-201ENST00000455800 2813 ntBASIC16.68■□□□□ 0.26
ERCC4Q92889 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms