Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.17□□□□□ -0.3
SCN1BQ07699 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.17□□□□□ -0.3
SCN1BQ07699 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
SCN1BQ07699 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SCN1BQ07699 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
SCN1BQ07699 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SCN1BQ07699 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.17□□□□□ -0.3
SCN1BQ07699 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SCN1BQ07699 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.17□□□□□ -0.3
SCN1BQ07699 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC13.17□□□□□ -0.3
SCN1BQ07699 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 TUBB3P1-201ENST00000405796 1332 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 CSPG4P11-201ENST00000560634 4910 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 AC131902.2-201ENST00000566892 2172 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
SCN1BQ07699 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 CNN2P2-201ENST00000443536 909 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.16□□□□□ -0.3
SCN1BQ07699 CNN2P3-201ENST00000450201 906 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 AC125807.1-201ENST00000483097 614 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.16□□□□□ -0.3
SCN1BQ07699 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 AC025678.2-201ENST00000562061 970 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.16□□□□□ -0.3
SCN1BQ07699 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.16□□□□□ -0.3
SCN1BQ07699 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 AL136317.3-201ENST00000618497 906 ntBASIC13.16□□□□□ -0.3
SCN1BQ07699 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
SCN1BQ07699 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC13.16□□□□□ -0.3
SCN1BQ07699 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.16□□□□□ -0.3
SCN1BQ07699 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SCN1BQ07699 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SCN1BQ07699 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SCN1BQ07699 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.15□□□□□ -0.3
SCN1BQ07699 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
SCN1BQ07699 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 AL365181.3-201ENST00000605886 3222 ntBASIC13.15□□□□□ -0.3
SCN1BQ07699 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SCN1BQ07699 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SCN1BQ07699 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms