Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ACE3P-201ENST00000423435 1973 ntBASIC15.56■□□□□ 0.08
LIG3P49916 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LIG3P49916 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIG3P49916 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LIG3P49916 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.55■□□□□ 0.08
LIG3P49916 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 HADH-202ENST00000403312 1752 ntTSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 C1QBPP1-201ENST00000400117 770 ntBASIC15.55■□□□□ 0.08
LIG3P49916 SOCS2P1-201ENST00000417727 557 ntBASIC15.55■□□□□ 0.08
LIG3P49916 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 AC007389.4-201ENST00000454674 793 ntBASIC15.55■□□□□ 0.08
LIG3P49916 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.55■□□□□ 0.08
LIG3P49916 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.55■□□□□ 0.08
LIG3P49916 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.55■□□□□ 0.08
LIG3P49916 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LIG3P49916 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LIG3P49916 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIG3P49916 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
LIG3P49916 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 TET3-201ENST00000305799 5174 ntTSL 5 BASIC15.54■□□□□ 0.08
LIG3P49916 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.54■□□□□ 0.08
LIG3P49916 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 DRD5P1-201ENST00000456605 1438 ntBASIC15.54■□□□□ 0.08
LIG3P49916 TSN-212ENST00000536142 3328 ntTSL 2 BASIC15.54■□□□□ 0.08
LIG3P49916 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC15.54■□□□□ 0.08
LIG3P49916 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.54■□□□□ 0.08
LIG3P49916 AC026410.3-201ENST00000514280 936 ntBASIC15.54■□□□□ 0.08
LIG3P49916 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.54■□□□□ 0.08
LIG3P49916 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.54■□□□□ 0.08
LIG3P49916 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.54■□□□□ 0.08
LIG3P49916 AC010319.3-201ENST00000597028 470 ntBASIC15.54■□□□□ 0.08
LIG3P49916 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
LIG3P49916 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
LIG3P49916 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIG3P49916 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC15.54■□□□□ 0.08
LIG3P49916 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
LIG3P49916 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
LIG3P49916 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.53■□□□□ 0.08
LIG3P49916 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.53■□□□□ 0.08
LIG3P49916 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.53■□□□□ 0.08
LIG3P49916 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LIG3P49916 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms