Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 KRT8P31-201ENST00000504812 1408 ntBASIC12.8□□□□□ -0.36
COL8A1P27658 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 AC021305.1-201ENST00000520656 1514 ntBASIC12.8□□□□□ -0.36
COL8A1P27658 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
COL8A1P27658 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
COL8A1P27658 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 RN7SKP230-201ENST00000365642 335 ntBASIC12.8□□□□□ -0.36
COL8A1P27658 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC12.8□□□□□ -0.36
COL8A1P27658 RN7SKP109-201ENST00000410592 316 ntBASIC12.8□□□□□ -0.36
COL8A1P27658 AC004522.1-201ENST00000419978 654 ntBASIC12.8□□□□□ -0.36
COL8A1P27658 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC12.8□□□□□ -0.36
COL8A1P27658 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC12.8□□□□□ -0.36
COL8A1P27658 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
COL8A1P27658 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 AL034417.3-201ENST00000641100 1043 ntBASIC12.8□□□□□ -0.36
COL8A1P27658 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.8□□□□□ -0.36
COL8A1P27658 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
COL8A1P27658 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL8A1P27658 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.8□□□□□ -0.36
COL8A1P27658 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 AL137783.1-201ENST00000623494 1896 ntBASIC12.79□□□□□ -0.36
COL8A1P27658 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
COL8A1P27658 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 AL157407.1-201ENST00000435784 904 ntBASIC12.79□□□□□ -0.36
COL8A1P27658 RN7SL494P-201ENST00000461517 304 ntBASIC12.79□□□□□ -0.36
COL8A1P27658 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 AC010632.2-201ENST00000588369 1224 ntBASIC12.79□□□□□ -0.36
COL8A1P27658 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
COL8A1P27658 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.79□□□□□ -0.36
COL8A1P27658 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.79□□□□□ -0.36
COL8A1P27658 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 AC023824.1-201ENST00000562945 2975 ntBASIC12.79□□□□□ -0.36
COL8A1P27658 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 AL359258.3-201ENST00000622910 2331 ntBASIC12.79□□□□□ -0.36
COL8A1P27658 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.79□□□□□ -0.36
COL8A1P27658 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.79□□□□□ -0.36
COL8A1P27658 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL8A1P27658 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms