Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC18.02■□□□□ 0.48
CACNA1FO60840 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1FO60840 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1FO60840 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CACNA1FO60840 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.02■□□□□ 0.48
CACNA1FO60840 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1FO60840 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CACNA1FO60840 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1FO60840 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CACNA1FO60840 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1FO60840 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1FO60840 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1FO60840 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1FO60840 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1FO60840 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1FO60840 AC004554.1-201ENST00000422830 1468 ntBASIC18.02■□□□□ 0.48
CACNA1FO60840 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CACNA1FO60840 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 HINT2P1-201ENST00000419438 481 ntBASIC18.02■□□□□ 0.47
CACNA1FO60840 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.02■□□□□ 0.47
CACNA1FO60840 AC130709.1-201ENST00000484779 1212 ntBASIC18.02■□□□□ 0.47
CACNA1FO60840 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.02■□□□□ 0.47
CACNA1FO60840 AC138701.2-201ENST00000553634 226 ntBASIC18.02■□□□□ 0.47
CACNA1FO60840 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.02■□□□□ 0.47
CACNA1FO60840 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CACNA1FO60840 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC18.02■□□□□ 0.47
CACNA1FO60840 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1FO60840 AL590824.1-201ENST00000403828 1349 ntBASIC18.02■□□□□ 0.47
CACNA1FO60840 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC18.01■□□□□ 0.47
CACNA1FO60840 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CACNA1FO60840 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.01■□□□□ 0.47
CACNA1FO60840 AC019109.1-201ENST00000401725 1874 ntBASIC18.01■□□□□ 0.47
CACNA1FO60840 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1FO60840 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.01■□□□□ 0.47
CACNA1FO60840 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC18.01■□□□□ 0.47
CACNA1FO60840 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.01■□□□□ 0.47
CACNA1FO60840 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC18.01■□□□□ 0.47
CACNA1FO60840 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
CACNA1FO60840 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.01■□□□□ 0.47
CACNA1FO60840 AL021707.6-201ENST00000609212 491 ntBASIC18.01■□□□□ 0.47
CACNA1FO60840 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CACNA1FO60840 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1FO60840 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CACNA1FO60840 AC027601.5-201ENST00000624065 2482 ntBASIC18.01■□□□□ 0.47
CACNA1FO60840 AC011474.4-201ENST00000623523 2076 ntBASIC18.01■□□□□ 0.47
CACNA1FO60840 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18■□□□□ 0.47
CACNA1FO60840 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18■□□□□ 0.47
CACNA1FO60840 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18■□□□□ 0.47
CACNA1FO60840 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CACNA1FO60840 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CACNA1FO60840 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CACNA1FO60840 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CACNA1FO60840 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1FO60840 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1FO60840 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1FO60840 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CACNA1FO60840 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms