Protein–RNA interactions for Protein: O43347

MSI1, RNA-binding protein Musashi homolog 1, humanhuman

Known RBP Predictions only

Length 362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSI1O43347 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
MSI1O43347 AC144522.1-201ENST00000625111 1658 ntBASIC15.22■□□□□ 0.03
MSI1O43347 AC215219.1-201ENST00000400706 1817 ntBASIC15.22■□□□□ 0.03
MSI1O43347 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.22■□□□□ 0.03
MSI1O43347 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 AC016700.1-201ENST00000429424 312 ntBASIC15.21■□□□□ 0.03
MSI1O43347 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 EIF4HP1-201ENST00000453115 687 ntBASIC15.21■□□□□ 0.03
MSI1O43347 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.21■□□□□ 0.03
MSI1O43347 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.21■□□□□ 0.03
MSI1O43347 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.21■□□□□ 0.03
MSI1O43347 HLA-J-204ENST00000495278 958 ntBASIC15.21■□□□□ 0.03
MSI1O43347 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.21■□□□□ 0.03
MSI1O43347 AC138649.2-201ENST00000615886 705 ntBASIC15.21■□□□□ 0.03
MSI1O43347 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.21■□□□□ 0.03
MSI1O43347 AC244452.3-201ENST00000636814 210 ntBASIC15.21■□□□□ 0.03
MSI1O43347 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.21■□□□□ 0.03
MSI1O43347 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSI1O43347 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.21■□□□□ 0.03
MSI1O43347 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.02
MSI1O43347 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.21■□□□□ 0.02
MSI1O43347 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
MSI1O43347 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
MSI1O43347 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.21■□□□□ 0.02
MSI1O43347 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSI1O43347 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
MSI1O43347 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.2■□□□□ 0.02
MSI1O43347 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
MSI1O43347 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.2■□□□□ 0.02
MSI1O43347 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.2■□□□□ 0.02
MSI1O43347 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.2■□□□□ 0.02
MSI1O43347 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
MSI1O43347 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
MSI1O43347 SCARNA20.5-201ENST00000516991 142 ntBASIC15.2■□□□□ 0.02
MSI1O43347 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.2■□□□□ 0.02
MSI1O43347 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.2■□□□□ 0.02
MSI1O43347 ACTG1P17-201ENST00000558391 1119 ntBASIC15.2■□□□□ 0.02
MSI1O43347 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.2■□□□□ 0.02
MSI1O43347 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.2■□□□□ 0.02
MSI1O43347 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.2■□□□□ 0.02
MSI1O43347 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.2■□□□□ 0.02
MSI1O43347 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.2■□□□□ 0.02
MSI1O43347 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.2■□□□□ 0.02
MSI1O43347 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
MSI1O43347 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSI1O43347 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.19■□□□□ 0.02
MSI1O43347 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSI1O43347 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms