Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 AL445209.1-201ENST00000607269 3491 ntBASIC13.93□□□□□ -0.18
AP4S1Q9Y587 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 AL136172.1-201ENST00000598590 1394 ntBASIC13.93□□□□□ -0.18
AP4S1Q9Y587 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 AC015688.4-201ENST00000580780 1647 ntBASIC13.93□□□□□ -0.18
AP4S1Q9Y587 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.93□□□□□ -0.18
AP4S1Q9Y587 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 YBX2P1-201ENST00000394192 760 ntBASIC13.92□□□□□ -0.18
AP4S1Q9Y587 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 RPL13AP23-201ENST00000480739 586 ntBASIC13.92□□□□□ -0.18
AP4S1Q9Y587 GAPDHP40-201ENST00000505218 1006 ntBASIC13.92□□□□□ -0.18
AP4S1Q9Y587 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.92□□□□□ -0.18
AP4S1Q9Y587 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
AP4S1Q9Y587 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms