Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 AL590640.2-201ENST00000457038 527 ntBASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS29Q9UBQ0 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CU639417.3-201ENST00000624240 1404 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 FAM197Y7-201ENST00000432892 766 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 FTH1P14-201ENST00000482930 551 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AC132938.2-201ENST00000579188 680 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AC006453.4-201ENST00000636949 1252 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AC002472.3-201ENST00000640124 621 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AL591163.1-201ENST00000641757 987 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 HSPA8P5-201ENST00000456928 2069 ntBASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS29Q9UBQ0 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.15
VPS29Q9UBQ0 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
VPS29Q9UBQ0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms