Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PAAF1Q9BRP4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 CICP24-201ENST00000605464 2705 ntBASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 FOS-204ENST00000554617 796 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 SIGLEC18P-201ENST00000602271 909 ntBASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 YRDCP1-201ENST00000621419 643 ntBASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PAAF1Q9BRP4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 KRT18P9-201ENST00000604826 1300 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NOC2LP1-201ENST00000450578 752 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 RN7SL530P-201ENST00000485097 298 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 SORD2P-201ENST00000558556 1069 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 MIR4522-201ENST00000584932 87 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AC103810.10-201ENST00000606504 343 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AC068587.6-202ENST00000641839 5619 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 TSPY26P-202ENST00000565928 3884 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 KRT8P31-201ENST00000504812 1408 ntBASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PAAF1Q9BRP4 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.49■□□□□ 0.07
PAAF1Q9BRP4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms