Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 RN7SKP230-201ENST00000365642 335 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 TLE1P1-201ENST00000422965 589 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AC131206.1-201ENST00000538078 1211 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 ENPP7P5-201ENST00000541031 1031 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AL603764.1-201ENST00000636452 321 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AC087386.2-201ENST00000623212 4637 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC002472.2-201ENST00000442739 958 ntBASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 BCRP1-201ENST00000444246 691 ntBASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC022137.2-201ENST00000503482 481 ntBASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 AC140912.1-201ENST00000577171 1054 ntBASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLHC1Q8NHS4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms