Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 AL645933.1-201ENST00000440087 609 ntBASIC17.12■□□□□ 0.33
CCDC96Q2M329 SPTLC1P5-201ENST00000450718 252 ntBASIC17.12■□□□□ 0.33
CCDC96Q2M329 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC96Q2M329 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 SCARNA21-201ENST00000517026 139 ntBASIC17.12■□□□□ 0.33
CCDC96Q2M329 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 AL021578.1-201ENST00000613646 709 ntBASIC17.12■□□□□ 0.33
CCDC96Q2M329 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC96Q2M329 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC96Q2M329 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC96Q2M329 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC96Q2M329 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC96Q2M329 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.11■□□□□ 0.33
CCDC96Q2M329 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 AL157407.1-201ENST00000435784 904 ntBASIC17.11■□□□□ 0.33
CCDC96Q2M329 VDAC1P1-201ENST00000439229 848 ntBASIC17.11■□□□□ 0.33
CCDC96Q2M329 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 RN7SL11P-201ENST00000471305 293 ntBASIC17.11■□□□□ 0.33
CCDC96Q2M329 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 AL645939.5-201ENST00000606834 243 ntBASIC17.11■□□□□ 0.33
CCDC96Q2M329 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC96Q2M329 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC96Q2M329 AC136759.1-202ENST00000530858 2194 ntBASIC17.11■□□□□ 0.33
CCDC96Q2M329 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 MIR769-201ENST00000390225 118 ntBASIC17.1■□□□□ 0.33
CCDC96Q2M329 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.1■□□□□ 0.33
CCDC96Q2M329 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 AL160314.3-201ENST00000556041 767 ntBASIC17.1■□□□□ 0.33
CCDC96Q2M329 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 AC015688.4-201ENST00000580780 1647 ntBASIC17.1■□□□□ 0.33
CCDC96Q2M329 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC96Q2M329 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC96Q2M329 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms