Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH4P55283 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH4P55283 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CDH4P55283 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.96□□□□□ -0.01
CDH4P55283 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.96□□□□□ -0.01
CDH4P55283 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.96□□□□□ -0.01
CDH4P55283 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.96□□□□□ -0.01
CDH4P55283 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CDH4P55283 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.96□□□□□ -0.01
CDH4P55283 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CDH4P55283 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH4P55283 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CDH4P55283 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH4P55283 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CDH4P55283 LINC00552-201ENST00000625151 2579 ntBASIC14.96□□□□□ -0.01
CDH4P55283 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
CDH4P55283 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH4P55283 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CDH4P55283 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
CDH4P55283 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
CDH4P55283 AP001267.2-201ENST00000532619 2086 ntBASIC14.96□□□□□ -0.02
CDH4P55283 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.02
CDH4P55283 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.02
CDH4P55283 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CDH4P55283 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 AHCYP4-201ENST00000419201 1315 ntBASIC14.95□□□□□ -0.02
CDH4P55283 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CDH4P55283 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CDH4P55283 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 CALR4P-201ENST00000431943 946 ntBASIC14.95□□□□□ -0.02
CDH4P55283 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 AC125604.1-201ENST00000496255 707 ntBASIC14.95□□□□□ -0.02
CDH4P55283 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.95□□□□□ -0.02
CDH4P55283 AL645939.5-201ENST00000606834 243 ntBASIC14.95□□□□□ -0.02
CDH4P55283 AC026740.1-201ENST00000607068 791 ntBASIC14.95□□□□□ -0.02
CDH4P55283 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
CDH4P55283 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.95□□□□□ -0.02
CDH4P55283 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.95□□□□□ -0.02
CDH4P55283 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.95□□□□□ -0.02
CDH4P55283 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH4P55283 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.94□□□□□ -0.02
CDH4P55283 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CDH4P55283 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH4P55283 TUBBP5-203ENST00000508529 1334 ntBASIC14.94□□□□□ -0.02
CDH4P55283 AL365209.1-201ENST00000624418 6473 ntBASIC14.94□□□□□ -0.02
CDH4P55283 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH4P55283 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH4P55283 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH4P55283 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CDH4P55283 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH4P55283 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.94□□□□□ -0.02
CDH4P55283 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CDH4P55283 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH4P55283 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms