Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 AC012645.4-201ENST00000610691 1061 ntBASIC13.91□□□□□ -0.18
RFX3P48380 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
RFX3P48380 AL354718.3-201ENST00000616414 581 ntBASIC13.91□□□□□ -0.18
RFX3P48380 CR382287.1-201ENST00000623954 586 ntBASIC13.91□□□□□ -0.18
RFX3P48380 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 MEX3B-202ENST00000558133 4333 ntBASIC13.91□□□□□ -0.18
RFX3P48380 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RFX3P48380 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
RFX3P48380 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RFX3P48380 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
RFX3P48380 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 NME2P1-201ENST00000426182 414 ntBASIC13.9□□□□□ -0.18
RFX3P48380 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.9□□□□□ -0.18
RFX3P48380 AC005225.4-201ENST00000557330 545 ntBASIC13.9□□□□□ -0.18
RFX3P48380 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.9□□□□□ -0.18
RFX3P48380 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.9□□□□□ -0.18
RFX3P48380 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 AL022328.1-201ENST00000610050 478 ntBASIC13.9□□□□□ -0.18
RFX3P48380 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.9□□□□□ -0.18
RFX3P48380 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.9□□□□□ -0.18
RFX3P48380 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.9□□□□□ -0.18
RFX3P48380 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.9□□□□□ -0.18
RFX3P48380 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RFX3P48380 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.9□□□□□ -0.19
RFX3P48380 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
RFX3P48380 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
RFX3P48380 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
RFX3P48380 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.9□□□□□ -0.19
RFX3P48380 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
RFX3P48380 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.89□□□□□ -0.19
RFX3P48380 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RFX3P48380 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms