Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CDX1P47902 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC12.12□□□□□ -0.47
CDX1P47902 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CDX1P47902 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 KRT8P22-201ENST00000562317 1415 ntBASIC12.11□□□□□ -0.47
CDX1P47902 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 FTO-214ENST00000636218 2227 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 AC011700.1-201ENST00000610409 2627 ntBASIC12.11□□□□□ -0.47
CDX1P47902 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
CDX1P47902 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 GK-202ENST00000378941 458 ntTSL 3 BASIC12.11□□□□□ -0.47
CDX1P47902 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.11□□□□□ -0.47
CDX1P47902 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 AC132938.2-201ENST00000579188 680 ntBASIC12.11□□□□□ -0.47
CDX1P47902 AC015910.1-201ENST00000579400 975 ntBASIC12.11□□□□□ -0.47
CDX1P47902 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.11□□□□□ -0.47
CDX1P47902 AL591163.1-201ENST00000641757 987 ntBASIC12.11□□□□□ -0.47
CDX1P47902 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.11□□□□□ -0.47
CDX1P47902 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
CDX1P47902 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
CDX1P47902 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
CDX1P47902 AC114271.1-201ENST00000612689 2813 ntBASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms