Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RPL3P5-201ENST00000441645 1232 ntBASIC13.25□□□□□ -0.29
SPTA1P02549 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 AC090616.6-203ENST00000579186 1945 ntBASIC13.25□□□□□ -0.29
SPTA1P02549 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC13.25□□□□□ -0.29
SPTA1P02549 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC13.25□□□□□ -0.29
SPTA1P02549 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC13.25□□□□□ -0.29
SPTA1P02549 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 AL022334.2-201ENST00000610000 484 ntBASIC13.25□□□□□ -0.29
SPTA1P02549 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.25□□□□□ -0.29
SPTA1P02549 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SPTA1P02549 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SPTA1P02549 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SPTA1P02549 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC13.24□□□□□ -0.29
SPTA1P02549 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 FAM86B3P-203ENST00000523992 854 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 OR5BD1P-201ENST00000532527 817 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 AC138701.2-201ENST00000553634 226 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.24□□□□□ -0.29
SPTA1P02549 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
SPTA1P02549 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SPTA1P02549 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 AC023090.2-201ENST00000625182 2110 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 AD000864.1-201ENST00000624076 2295 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 RNA5SP359-201ENST00000364838 113 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC13.24□□□□□ -0.29
SPTA1P02549 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 GCOM2-201ENST00000509133 1104 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC13.24□□□□□ -0.29
SPTA1P02549 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 AC140113.1-201ENST00000603467 169 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SPTA1P02549 AC112504.1-201ENST00000623415 1841 ntBASIC13.24□□□□□ -0.29
SPTA1P02549 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.24□□□□□ -0.29
SPTA1P02549 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.24□□□□□ -0.29
SPTA1P02549 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SPTA1P02549 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.24□□□□□ -0.29
SPTA1P02549 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.24□□□□□ -0.29
SPTA1P02549 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms