Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 TUBB3P1-201ENST00000405796 1332 ntBASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AC087499.5-201ENST00000452760 1342 ntBASIC16.05■□□□□ 0.16
CCDC66A2RUB6 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AC004461.2-201ENST00000629517 803 ntBASIC16.05■□□□□ 0.16
CCDC66A2RUB6 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 AC073548.1-201ENST00000624088 1882 ntBASIC16.05■□□□□ 0.16
CCDC66A2RUB6 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC66A2RUB6 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 AC125807.1-201ENST00000483097 614 ntBASIC16.04■□□□□ 0.16
CCDC66A2RUB6 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 AC069120.2-201ENST00000524091 540 ntBASIC16.04■□□□□ 0.16
CCDC66A2RUB6 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 Z92544.3-201ENST00000624747 417 ntBASIC16.04■□□□□ 0.16
CCDC66A2RUB6 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 AP001267.2-201ENST00000532619 2086 ntBASIC16.04■□□□□ 0.16
CCDC66A2RUB6 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC66A2RUB6 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 MEX3B-202ENST00000558133 4333 ntBASIC16.03■□□□□ 0.16
CCDC66A2RUB6 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC66A2RUB6 TSEN15P1-201ENST00000423257 515 ntBASIC16.03■□□□□ 0.16
CCDC66A2RUB6 KLF2P3-201ENST00000451977 1087 ntBASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms