Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 KRT8P38-201ENST00000441370 1430 ntBASIC14.46□□□□□ -0.09
TTC28Q96AY4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
TTC28Q96AY4 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
TTC28Q96AY4 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
TTC28Q96AY4 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
TTC28Q96AY4 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC14.46□□□□□ -0.1
TTC28Q96AY4 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
TTC28Q96AY4 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.46□□□□□ -0.1
TTC28Q96AY4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 MIR1249-201ENST00000408671 66 ntBASIC14.45□□□□□ -0.1
TTC28Q96AY4 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 ATP5G1P7-201ENST00000444398 400 ntBASIC14.45□□□□□ -0.1
TTC28Q96AY4 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 PDPN-208ENST00000509009 571 ntTSL 4 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 PHBP18-201ENST00000546648 813 ntBASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC124944.3-201ENST00000607976 1304 ntBASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 AC069224.1-201ENST00000566372 1715 ntBASIC14.45□□□□□ -0.1
TTC28Q96AY4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TTC28Q96AY4 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 DNM1P46-202ENST00000415963 882 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 CHCHD2P6-201ENST00000454346 447 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC091905.3-201ENST00000624959 234 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 BX679664.3-201ENST00000414070 555 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC113935.1-201ENST00000471722 555 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 ELOBP2-201ENST00000526184 355 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC010202.1-201ENST00000551181 405 ntBASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
TTC28Q96AY4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.44□□□□□ -0.1
TTC28Q96AY4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms