Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AL513477.1-201ENST00000602865 2407 ntBASIC18.21■□□□□ 0.51
UBE3BQ7Z3V4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC18.21■□□□□ 0.51
UBE3BQ7Z3V4 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
UBE3BQ7Z3V4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC18.21■□□□□ 0.51
UBE3BQ7Z3V4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
UBE3BQ7Z3V4 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.21■□□□□ 0.5
UBE3BQ7Z3V4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
UBE3BQ7Z3V4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 AC023824.1-201ENST00000562945 2975 ntBASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UBE3BQ7Z3V4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 RNA5SP359-201ENST00000364838 113 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 OR2K2-202ENST00000374428 1038 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 EEF1DP6-201ENST00000449232 372 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 IGLV3-15-201ENST00000518356 244 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 MIR3188-201ENST00000583494 85 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 TBC1D3J-201ENST00000620719 1426 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 AC006453.1-201ENST00000636037 1257 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 INTS4P1-203ENST00000641008 3683 ntBASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
UBE3BQ7Z3V4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 ELK2AP-201ENST00000392510 1007 ntBASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms