Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 ST13P19-201ENST00000442505 1124 ntBASIC15.27■□□□□ 0.04
EPHB3P54753 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
EPHB3P54753 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
EPHB3P54753 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.27■□□□□ 0.04
EPHB3P54753 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.27■□□□□ 0.04
EPHB3P54753 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.27■□□□□ 0.04
EPHB3P54753 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.27■□□□□ 0.04
EPHB3P54753 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.27■□□□□ 0.04
EPHB3P54753 PHBP15-201ENST00000574228 665 ntBASIC15.27■□□□□ 0.04
EPHB3P54753 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.27■□□□□ 0.04
EPHB3P54753 AC103810.10-201ENST00000606504 343 ntBASIC15.27■□□□□ 0.04
EPHB3P54753 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
EPHB3P54753 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.27■□□□□ 0.04
EPHB3P54753 AC007718.1-201ENST00000621078 280 ntBASIC15.27■□□□□ 0.04
EPHB3P54753 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15.27■□□□□ 0.04
EPHB3P54753 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
EPHB3P54753 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
EPHB3P54753 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
EPHB3P54753 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.27■□□□□ 0.03
EPHB3P54753 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.27■□□□□ 0.03
EPHB3P54753 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.27■□□□□ 0.03
EPHB3P54753 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.27■□□□□ 0.03
EPHB3P54753 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.27■□□□□ 0.03
EPHB3P54753 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.27■□□□□ 0.03
EPHB3P54753 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.27■□□□□ 0.03
EPHB3P54753 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.03
EPHB3P54753 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
EPHB3P54753 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
EPHB3P54753 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 CAP2P1-201ENST00000557743 1390 ntBASIC15.26■□□□□ 0.03
EPHB3P54753 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC15.26■□□□□ 0.03
EPHB3P54753 RN7SL530P-201ENST00000485097 298 ntBASIC15.26■□□□□ 0.03
EPHB3P54753 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.26■□□□□ 0.03
EPHB3P54753 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
EPHB3P54753 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 TCAF2P1-201ENST00000291129 2421 ntBASIC15.26■□□□□ 0.03
EPHB3P54753 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.26■□□□□ 0.03
EPHB3P54753 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.26■□□□□ 0.03
EPHB3P54753 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
EPHB3P54753 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
EPHB3P54753 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
EPHB3P54753 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms