Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 AC134915.1-201ENST00000426461 574 ntBASIC12.13□□□□□ -0.47
CDX1P47902 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.13□□□□□ -0.47
CDX1P47902 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.13□□□□□ -0.47
CDX1P47902 AL162726.2-201ENST00000438986 1017 ntBASIC12.13□□□□□ -0.47
CDX1P47902 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.13□□□□□ -0.47
CDX1P47902 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 ENPP7P5-201ENST00000541031 1031 ntBASIC12.13□□□□□ -0.47
CDX1P47902 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.13□□□□□ -0.47
CDX1P47902 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.13□□□□□ -0.47
CDX1P47902 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.13□□□□□ -0.47
CDX1P47902 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CDX1P47902 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
CDX1P47902 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
CDX1P47902 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CDX1P47902 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.12□□□□□ -0.47
CDX1P47902 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.12□□□□□ -0.47
CDX1P47902 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.12□□□□□ -0.47
CDX1P47902 AC007389.4-201ENST00000454674 793 ntBASIC12.12□□□□□ -0.47
CDX1P47902 RN7SL837P-201ENST00000463010 287 ntBASIC12.12□□□□□ -0.47
CDX1P47902 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.12□□□□□ -0.47
CDX1P47902 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CDX1P47902 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms