Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC24.34■■□□□ 1.49
CUX2O14529 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CUX2O14529 TUBB2BP1-201ENST00000404155 871 ntBASIC24.34■■□□□ 1.49
CUX2O14529 AC073210.1-201ENST00000414799 232 ntBASIC24.34■■□□□ 1.49
CUX2O14529 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC24.34■■□□□ 1.49
CUX2O14529 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC24.34■■□□□ 1.49
CUX2O14529 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC24.34■■□□□ 1.49
CUX2O14529 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC24.34■■□□□ 1.49
CUX2O14529 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC24.34■■□□□ 1.49
CUX2O14529 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 MIR4459-201ENST00000581837 66 ntBASIC24.34■■□□□ 1.49
CUX2O14529 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC24.34■■□□□ 1.49
CUX2O14529 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC24.34■■□□□ 1.49
CUX2O14529 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX2O14529 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CUX2O14529 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
CUX2O14529 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX2O14529 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX2O14529 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC24.34■■□□□ 1.49
CUX2O14529 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX2O14529 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX2O14529 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX2O14529 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
CUX2O14529 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC24.33■■□□□ 1.49
CUX2O14529 KRT18P33-201ENST00000398525 1043 ntBASIC24.33■■□□□ 1.49
CUX2O14529 CA5BP1-205ENST00000435806 1064 ntBASIC24.33■■□□□ 1.49
CUX2O14529 CCND3P1-201ENST00000438347 580 ntBASIC24.33■■□□□ 1.49
CUX2O14529 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC24.33■■□□□ 1.49
CUX2O14529 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC24.33■■□□□ 1.49
CUX2O14529 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC24.33■■□□□ 1.49
CUX2O14529 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
CUX2O14529 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC24.33■■□□□ 1.49
CUX2O14529 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 HTR7P1-202ENST00000624664 4411 ntBASIC24.33■■□□□ 1.49
CUX2O14529 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX2O14529 AL365203.3-201ENST00000609742 2057 ntBASIC24.33■■□□□ 1.48
CUX2O14529 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC24.33■■□□□ 1.48
CUX2O14529 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.48
CUX2O14529 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.48
CUX2O14529 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.48
CUX2O14529 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
CUX2O14529 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 RN7SKP155-201ENST00000516031 288 ntBASIC24.32■■□□□ 1.48
CUX2O14529 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC24.32■■□□□ 1.48
CUX2O14529 RN7SL202P-201ENST00000584410 262 ntBASIC24.32■■□□□ 1.48
CUX2O14529 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
CUX2O14529 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 AC022532.1-201ENST00000624563 1728 ntBASIC24.32■■□□□ 1.48
CUX2O14529 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 AC126365.1-201ENST00000578585 1514 ntBASIC24.32■■□□□ 1.48
CUX2O14529 AC097474.1-201ENST00000506481 1371 ntBASIC24.32■■□□□ 1.48
CUX2O14529 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX2O14529 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CUX2O14529 SPTLC1P3-201ENST00000403408 259 ntBASIC24.32■■□□□ 1.48
CUX2O14529 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC24.32■■□□□ 1.48
CUX2O14529 YY1P2-201ENST00000438766 948 ntBASIC24.32■■□□□ 1.48
CUX2O14529 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX2O14529 AC104117.4-201ENST00000521486 847 ntBASIC24.32■■□□□ 1.48
CUX2O14529 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC24.32■■□□□ 1.48
CUX2O14529 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC24.32■■□□□ 1.48
CUX2O14529 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC24.32■■□□□ 1.48
CUX2O14529 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
CUX2O14529 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CUX2O14529 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
CUX2O14529 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CUX2O14529 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms