Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC012441.1-201ENST00000446669 685 ntBASIC14.2□□□□□ -0.14
SLC28A1O00337 TMEM198B-204ENST00000484016 896 ntBASIC14.2□□□□□ -0.14
SLC28A1O00337 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.2□□□□□ -0.14
SLC28A1O00337 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SLC28A1O00337 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.2□□□□□ -0.14
SLC28A1O00337 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SLC28A1O00337 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.2□□□□□ -0.14
SLC28A1O00337 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SLC28A1O00337 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SLC28A1O00337 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.2□□□□□ -0.14
SLC28A1O00337 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SLC28A1O00337 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SLC28A1O00337 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SLC28A1O00337 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.2□□□□□ -0.14
SLC28A1O00337 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.2□□□□□ -0.14
SLC28A1O00337 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SLC28A1O00337 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SLC28A1O00337 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
SLC28A1O00337 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 AC134312.5-201ENST00000568031 1313 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 AC020910.5-201ENST00000623668 1865 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 PIN1P1-201ENST00000412108 996 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 ACTG1P3-201ENST00000431775 1114 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.19□□□□□ -0.14
SLC28A1O00337 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 PTP4A1P2-201ENST00000546033 454 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 HSPA8P5-201ENST00000456928 2069 ntBASIC14.19□□□□□ -0.14
SLC28A1O00337 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SLC28A1O00337 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
SLC28A1O00337 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.19□□□□□ -0.14
SLC28A1O00337 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SLC28A1O00337 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
SLC28A1O00337 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
SLC28A1O00337 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.18□□□□□ -0.14
SLC28A1O00337 PUDPP3-201ENST00000445368 636 ntBASIC14.18□□□□□ -0.14
SLC28A1O00337 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.18□□□□□ -0.14
SLC28A1O00337 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.18□□□□□ -0.14
SLC28A1O00337 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.18□□□□□ -0.14
SLC28A1O00337 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.18□□□□□ -0.14
SLC28A1O00337 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
SLC28A1O00337 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.18□□□□□ -0.14
SLC28A1O00337 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SLC28A1O00337 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.18□□□□□ -0.14
SLC28A1O00337 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms