Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DRB4X5D2U9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HLA-DRB4X5D2U9 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 RARRES2P1-201ENST00000474487 481 ntBASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 AC004812.2-201ENST00000611079 2094 ntBASIC17.05■□□□□ 0.32
HLA-DRB4X5D2U9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 AC131274.2-201ENST00000580697 1507 ntBASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.04■□□□□ 0.32
HLA-DRB4X5D2U9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 AC137630.3-201ENST00000607245 391 ntBASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DRB4X5D2U9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HLA-DRB4X5D2U9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DRB4X5D2U9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DRB4X5D2U9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DRB4X5D2U9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DRB4X5D2U9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DRB4X5D2U9 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DRB4X5D2U9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.02■□□□□ 0.31
HLA-DRB4X5D2U9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HLA-DRB4X5D2U9 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HLA-DRB4X5D2U9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 BX664725.1-201ENST00000438252 379 ntBASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC17■□□□□ 0.31
HLA-DRB4X5D2U9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC16.99■□□□□ 0.31
HLA-DRB4X5D2U9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HLA-DRB4X5D2U9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms