Protein–RNA interactions for Protein: Q9Y5Y9

SCN10A, Sodium channel protein type 10 subunit alpha, humanhuman

Predictions only

Length 1,956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10AQ9Y5Y9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.34■■□□□ 1.65
SCN10AQ9Y5Y9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.34■■□□□ 1.65
SCN10AQ9Y5Y9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
SCN10AQ9Y5Y9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SCN10AQ9Y5Y9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SCN10AQ9Y5Y9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.33■■□□□ 1.65
SCN10AQ9Y5Y9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.33■■□□□ 1.65
SCN10AQ9Y5Y9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.33■■□□□ 1.65
SCN10AQ9Y5Y9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.33■■□□□ 1.65
SCN10AQ9Y5Y9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SCN10AQ9Y5Y9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SCN10AQ9Y5Y9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.32■■□□□ 1.64
SCN10AQ9Y5Y9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.32■■□□□ 1.64
SCN10AQ9Y5Y9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SCN10AQ9Y5Y9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SCN10AQ9Y5Y9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 BX842568.3-201ENST00000418104 571 ntBASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SCN10AQ9Y5Y9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.3■■□□□ 1.64
SCN10AQ9Y5Y9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 AC233992.3-201ENST00000607491 485 ntBASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SCN10AQ9Y5Y9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.28■■□□□ 1.64
SCN10AQ9Y5Y9 AC009086.3-201ENST00000623486 1008 ntBASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 AC091060.1-201ENST00000623524 1766 ntBASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 MIR3181-201ENST00000578512 73 ntBASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
SCN10AQ9Y5Y9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 AC034268.1-201ENST00000441047 882 ntBASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.26■■□□□ 1.63
SCN10AQ9Y5Y9 SLC47A1P1-202ENST00000449666 945 ntBASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SCN10AQ9Y5Y9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 AL161729.1-201ENST00000604104 1402 ntBASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SCN10AQ9Y5Y9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms