Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 LINC00543-201ENST00000567234 1845 ntBASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 AC135279.3-201ENST00000610945 1311 ntBASIC27.15■■□□□ 1.94
NKX2-3Q8TAU0 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
NKX2-3Q8TAU0 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
NKX2-3Q8TAU0 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC27.14■■□□□ 1.93
NKX2-3Q8TAU0 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NKX2-3Q8TAU0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.13■■□□□ 1.93
NKX2-3Q8TAU0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.13■■□□□ 1.93
NKX2-3Q8TAU0 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NKX2-3Q8TAU0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC27.13■■□□□ 1.93
NKX2-3Q8TAU0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-3Q8TAU0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 AK3-203ENST00000447596 705 ntTSL 2 BASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 PBX2P1-201ENST00000493219 1291 ntBASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
NKX2-3Q8TAU0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 AC093323.1-202ENST00000635031 2045 ntBASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
NKX2-3Q8TAU0 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC27.09■■□□□ 1.93
NKX2-3Q8TAU0 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
NKX2-3Q8TAU0 AL512631.2-201ENST00000604634 923 ntBASIC27.09■■□□□ 1.93
NKX2-3Q8TAU0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC27.09■■□□□ 1.93
NKX2-3Q8TAU0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
NKX2-3Q8TAU0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 ABCB10P4-201ENST00000566803 2184 ntBASIC27.08■■□□□ 1.93
NKX2-3Q8TAU0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 AL022069.1-201ENST00000568025 1636 ntBASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.07■■□□□ 1.92
NKX2-3Q8TAU0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-3Q8TAU0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
NKX2-3Q8TAU0 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 CD72-202ENST00000378430 585 ntTSL 3 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
NKX2-3Q8TAU0 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 MIR6722-201ENST00000617286 78 ntBASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 RASSF1-AS1-201ENST00000629828 790 ntBASIC27.03■■□□□ 1.92
NKX2-3Q8TAU0 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
NKX2-3Q8TAU0 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
NKX2-3Q8TAU0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms