Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN3Q8NCR9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN3Q8NCR9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN3Q8NCR9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN3Q8NCR9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN3Q8NCR9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
CLRN3Q8NCR9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CLRN3Q8NCR9 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN3Q8NCR9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CLRN3Q8NCR9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CLRN3Q8NCR9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 AL133380.1-201ENST00000506013 324 ntBASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN3Q8NCR9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.12■□□□□ 0.49
CLRN3Q8NCR9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN3Q8NCR9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms