Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.72■□□□□ 0.59
PDLIM3Q53GG5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 HLA-L-211ENST00000482052 1765 ntBASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 AC104564.3-201ENST00000582367 638 ntBASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PDLIM3Q53GG5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
PDLIM3Q53GG5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
PDLIM3Q53GG5 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 RARRES2P6-201ENST00000567333 442 ntBASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM3Q53GG5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM3Q53GG5 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 AC018755.3-202ENST00000596210 929 ntBASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM3Q53GG5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 AC093536.1-201ENST00000569153 554 ntBASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 AC005837.3-201ENST00000612163 286 ntBASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 FOXO3B-201ENST00000395675 1928 ntBASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM3Q53GG5 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM3Q53GG5 ABCB10P4-201ENST00000566803 2184 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms