Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
CCDC144BQ3MJ40 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.43■■□□□ 1.82
CCDC144BQ3MJ40 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CCDC144BQ3MJ40 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CCDC144BQ3MJ40 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
CCDC144BQ3MJ40 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 AC097639.1-201ENST00000565519 1891 ntBASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC144BQ3MJ40 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC144BQ3MJ40 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC144BQ3MJ40 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
CCDC144BQ3MJ40 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.39■■□□□ 1.82
CCDC144BQ3MJ40 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.39■■□□□ 1.82
CCDC144BQ3MJ40 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.39■■□□□ 1.82
CCDC144BQ3MJ40 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.39■■□□□ 1.82
CCDC144BQ3MJ40 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CCDC144BQ3MJ40 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
CCDC144BQ3MJ40 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
CCDC144BQ3MJ40 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.39■■□□□ 1.81
CCDC144BQ3MJ40 AC068473.5-201ENST00000616428 2072 ntBASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC144BQ3MJ40 AC012676.1-201ENST00000574705 1949 ntBASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC144BQ3MJ40 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC144BQ3MJ40 PBX2P1-201ENST00000493219 1291 ntBASIC26.36■■□□□ 1.81
CCDC144BQ3MJ40 AC106739.1-201ENST00000617035 715 ntBASIC26.36■■□□□ 1.81
CCDC144BQ3MJ40 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC144BQ3MJ40 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC144BQ3MJ40 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC144BQ3MJ40 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC144BQ3MJ40 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.35■■□□□ 1.81
CCDC144BQ3MJ40 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.35■■□□□ 1.81
CCDC144BQ3MJ40 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
CCDC144BQ3MJ40 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
CCDC144BQ3MJ40 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
CCDC144BQ3MJ40 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC144BQ3MJ40 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC144BQ3MJ40 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC144BQ3MJ40 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC144BQ3MJ40 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
CCDC144BQ3MJ40 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms