Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX3-2P78367 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.47■■□□□ 1.67
NKX3-2P78367 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX3-2P78367 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.47■■□□□ 1.67
NKX3-2P78367 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX3-2P78367 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX3-2P78367 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.47■■□□□ 1.67
NKX3-2P78367 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
NKX3-2P78367 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.46■■□□□ 1.67
NKX3-2P78367 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
NKX3-2P78367 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NKX3-2P78367 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NKX3-2P78367 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.46■■□□□ 1.67
NKX3-2P78367 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NKX3-2P78367 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
NKX3-2P78367 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
NKX3-2P78367 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NKX3-2P78367 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
NKX3-2P78367 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NKX3-2P78367 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.44■■□□□ 1.66
NKX3-2P78367 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NKX3-2P78367 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
NKX3-2P78367 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.44■■□□□ 1.66
NKX3-2P78367 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.43■■□□□ 1.66
NKX3-2P78367 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.43■■□□□ 1.66
NKX3-2P78367 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX3-2P78367 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NKX3-2P78367 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX3-2P78367 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX3-2P78367 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NKX3-2P78367 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.43■■□□□ 1.66
NKX3-2P78367 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.43■■□□□ 1.66
NKX3-2P78367 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
NKX3-2P78367 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX3-2P78367 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NKX3-2P78367 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
NKX3-2P78367 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.42■■□□□ 1.66
NKX3-2P78367 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.42■■□□□ 1.66
NKX3-2P78367 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.42■■□□□ 1.66
NKX3-2P78367 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NKX3-2P78367 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.41■■□□□ 1.66
NKX3-2P78367 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NKX3-2P78367 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NKX3-2P78367 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NKX3-2P78367 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NKX3-2P78367 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25.41■■□□□ 1.66
NKX3-2P78367 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX3-2P78367 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.4■■□□□ 1.66
NKX3-2P78367 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.4■■□□□ 1.66
NKX3-2P78367 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX3-2P78367 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
NKX3-2P78367 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
NKX3-2P78367 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NKX3-2P78367 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.39■■□□□ 1.66
NKX3-2P78367 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NKX3-2P78367 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.39■■□□□ 1.66
NKX3-2P78367 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
NKX3-2P78367 AC034268.1-201ENST00000441047 882 ntBASIC25.39■■□□□ 1.66
NKX3-2P78367 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.39■■□□□ 1.65
NKX3-2P78367 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
NKX3-2P78367 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.65
NKX3-2P78367 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
NKX3-2P78367 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.38■■□□□ 1.65
NKX3-2P78367 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
NKX3-2P78367 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
NKX3-2P78367 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.38■■□□□ 1.65
NKX3-2P78367 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.38■■□□□ 1.65
NKX3-2P78367 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
NKX3-2P78367 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
NKX3-2P78367 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
NKX3-2P78367 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
NKX3-2P78367 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX3-2P78367 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX3-2P78367 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC25.37■■□□□ 1.65
NKX3-2P78367 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX3-2P78367 YBX1P1-201ENST00000445822 960 ntBASIC25.37■■□□□ 1.65
NKX3-2P78367 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.37■■□□□ 1.65
NKX3-2P78367 pRNA.6-201ENST00000610482 90 ntBASIC25.37■■□□□ 1.65
NKX3-2P78367 pRNA.5-201ENST00000612139 90 ntBASIC25.37■■□□□ 1.65
NKX3-2P78367 pRNA.11-201ENST00000618423 90 ntBASIC25.37■■□□□ 1.65
NKX3-2P78367 pRNA.13-201ENST00000619112 90 ntBASIC25.37■■□□□ 1.65
NKX3-2P78367 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX3-2P78367 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NKX3-2P78367 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
NKX3-2P78367 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.36■■□□□ 1.65
NKX3-2P78367 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.36■■□□□ 1.65
NKX3-2P78367 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NKX3-2P78367 AC141586.4-201ENST00000624558 1573 ntBASIC25.35■■□□□ 1.65
NKX3-2P78367 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
NKX3-2P78367 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.35■■□□□ 1.65
NKX3-2P78367 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.35■■□□□ 1.65
NKX3-2P78367 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
NKX3-2P78367 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
NKX3-2P78367 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms