Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DUX4L2-201ENST00000561772 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4L6-201ENST00000626483 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4L1-201ENST00000627662 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4L8-201ENST00000629013 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4L3-201ENST00000630187 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4L7-201ENST00000630678 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 DUX4L5-201ENST00000630834 1275 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 RARRES2P11-201ENST00000635158 484 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC30.63■■■□□ 2.49
COL18A1P39060 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL18A1P39060 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.62■■■□□ 2.49
COL18A1P39060 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL18A1P39060 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL18A1P39060 AC009086.3-201ENST00000623486 1008 ntBASIC30.62■■■□□ 2.49
COL18A1P39060 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.62■■■□□ 2.49
COL18A1P39060 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL18A1P39060 AK1-201ENST00000223836 736 ntTSL 3 BASIC30.61■■■□□ 2.49
COL18A1P39060 ASB1-202ENST00000409297 878 ntTSL 5 BASIC30.61■■■□□ 2.49
COL18A1P39060 AL022069.1-201ENST00000568025 1636 ntBASIC30.61■■■□□ 2.49
COL18A1P39060 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL18A1P39060 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC30.61■■■□□ 2.49
COL18A1P39060 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC30.61■■■□□ 2.49
COL18A1P39060 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.61■■■□□ 2.49
COL18A1P39060 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC30.61■■■□□ 2.49
COL18A1P39060 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC30.6■■■□□ 2.49
COL18A1P39060 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
COL18A1P39060 VGF-203ENST00000611537 1622 ntTSL 5 BASIC30.6■■■□□ 2.49
COL18A1P39060 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL18A1P39060 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
COL18A1P39060 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC30.6■■■□□ 2.49
COL18A1P39060 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
COL18A1P39060 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL18A1P39060 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
COL18A1P39060 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL18A1P39060 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
COL18A1P39060 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.59■■■□□ 2.49
COL18A1P39060 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL18A1P39060 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL18A1P39060 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC30.59■■■□□ 2.49
COL18A1P39060 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC30.59■■■□□ 2.49
COL18A1P39060 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
COL18A1P39060 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL18A1P39060 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.58■■■□□ 2.49
COL18A1P39060 GTSE1-AS1-202ENST00000623117 1518 ntBASIC30.58■■■□□ 2.49
COL18A1P39060 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC30.58■■■□□ 2.49
COL18A1P39060 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.58■■■□□ 2.49
COL18A1P39060 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL18A1P39060 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
COL18A1P39060 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC30.57■■■□□ 2.48
COL18A1P39060 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC30.57■■■□□ 2.48
COL18A1P39060 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL18A1P39060 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL18A1P39060 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC30.57■■■□□ 2.48
COL18A1P39060 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL18A1P39060 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
COL18A1P39060 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC30.56■■■□□ 2.48
COL18A1P39060 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC30.56■■■□□ 2.48
COL18A1P39060 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.56■■■□□ 2.48
COL18A1P39060 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL18A1P39060 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC30.56■■■□□ 2.48
COL18A1P39060 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL18A1P39060 YBX1P1-201ENST00000445822 960 ntBASIC30.55■■■□□ 2.48
COL18A1P39060 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL18A1P39060 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL18A1P39060 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
COL18A1P39060 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL18A1P39060 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC30.54■■■□□ 2.48
COL18A1P39060 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC30.54■■■□□ 2.48
COL18A1P39060 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC30.54■■■□□ 2.48
COL18A1P39060 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
COL18A1P39060 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL18A1P39060 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
COL18A1P39060 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC30.54■■■□□ 2.48
COL18A1P39060 GRAMD4P2-201ENST00000423297 1097 ntBASIC30.54■■■□□ 2.48
COL18A1P39060 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
COL18A1P39060 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.53■■■□□ 2.48
COL18A1P39060 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL18A1P39060 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL18A1P39060 AC022517.1-201ENST00000592429 346 ntBASIC30.53■■■□□ 2.48
COL18A1P39060 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
COL18A1P39060 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL18A1P39060 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL18A1P39060 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC30.52■■■□□ 2.48
COL18A1P39060 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
COL18A1P39060 RAB43-208ENST00000615093 783 ntTSL 5 BASIC30.52■■■□□ 2.48
COL18A1P39060 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
COL18A1P39060 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
COL18A1P39060 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC30.51■■■□□ 2.48
COL18A1P39060 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC30.51■■■□□ 2.48
COL18A1P39060 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
COL18A1P39060 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
COL18A1P39060 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC30.51■■■□□ 2.47
COL18A1P39060 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
COL18A1P39060 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL18A1P39060 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL18A1P39060 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL18A1P39060 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
COL18A1P39060 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms