Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AK1-201ENST00000223836 736 ntTSL 3 BASIC30.49■■■□□ 2.47
CSB-PGBD3P0DP91 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CSB-PGBD3P0DP91 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.49■■■□□ 2.47
CSB-PGBD3P0DP91 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 ASB1-202ENST00000409297 878 ntTSL 5 BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CSB-PGBD3P0DP91 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 NKILA-201ENST00000613231 537 ntTSL 4 BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 MIR6089-201ENST00000616698 64 ntBASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC30.47■■■□□ 2.47
CSB-PGBD3P0DP91 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CSB-PGBD3P0DP91 AC034268.1-201ENST00000441047 882 ntBASIC30.46■■■□□ 2.47
CSB-PGBD3P0DP91 IKBKGP1-201ENST00000612193 1073 ntBASIC30.46■■■□□ 2.47
CSB-PGBD3P0DP91 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CSB-PGBD3P0DP91 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 AC090192.1-201ENST00000517740 490 ntBASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 AC126544.1-201ENST00000580842 1059 ntBASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC30.45■■■□□ 2.47
CSB-PGBD3P0DP91 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 RARRES2P11-201ENST00000635158 484 ntBASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CSB-PGBD3P0DP91 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CSB-PGBD3P0DP91 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 HACD1-201ENST00000326961 773 ntTSL 2 BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CSB-PGBD3P0DP91 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 VGF-203ENST00000611537 1622 ntTSL 5 BASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 SNX3-202ENST00000349379 890 ntTSL 2 BASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 AC022517.1-201ENST00000592429 346 ntBASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 pRNA.6-201ENST00000610482 90 ntBASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 pRNA.5-201ENST00000612139 90 ntBASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 pRNA.11-201ENST00000618423 90 ntBASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 pRNA.13-201ENST00000619112 90 ntBASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CSB-PGBD3P0DP91 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
CSB-PGBD3P0DP91 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CSB-PGBD3P0DP91 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC30.4■■■□□ 2.46
CSB-PGBD3P0DP91 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC30.4■■■□□ 2.46
CSB-PGBD3P0DP91 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC30.4■■■□□ 2.46
CSB-PGBD3P0DP91 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
CSB-PGBD3P0DP91 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 AL031602.1-201ENST00000633169 911 ntBASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.39■■■□□ 2.46
CSB-PGBD3P0DP91 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CSB-PGBD3P0DP91 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 NME4-202ENST00000382940 766 ntTSL 3 BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 YBX1P1-201ENST00000445822 960 ntBASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 NME4-211ENST00000620944 1193 ntTSL 2 BASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC30.37■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms