Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC26.56■■□□□ 1.84
CTDNEP1O95476 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.56■■□□□ 1.84
CTDNEP1O95476 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
CTDNEP1O95476 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CTDNEP1O95476 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTDNEP1O95476 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
CTDNEP1O95476 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTDNEP1O95476 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.55■■□□□ 1.84
CTDNEP1O95476 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTDNEP1O95476 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTDNEP1O95476 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CTDNEP1O95476 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.54■■□□□ 1.84
CTDNEP1O95476 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CTDNEP1O95476 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CTDNEP1O95476 ANOS2P-203ENST00000472227 1816 ntBASIC26.54■■□□□ 1.84
CTDNEP1O95476 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CTDNEP1O95476 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.54■■□□□ 1.84
CTDNEP1O95476 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.54■■□□□ 1.84
CTDNEP1O95476 RARRES2P1-201ENST00000474487 481 ntBASIC26.54■■□□□ 1.84
CTDNEP1O95476 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CTDNEP1O95476 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CTDNEP1O95476 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CTDNEP1O95476 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTDNEP1O95476 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CTDNEP1O95476 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTDNEP1O95476 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC26.53■■□□□ 1.84
CTDNEP1O95476 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.53■■□□□ 1.84
CTDNEP1O95476 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.53■■□□□ 1.84
CTDNEP1O95476 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.53■■□□□ 1.84
CTDNEP1O95476 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTDNEP1O95476 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.53■■□□□ 1.84
CTDNEP1O95476 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTDNEP1O95476 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CTDNEP1O95476 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 SNX5-217ENST00000606557 1087 ntBASIC26.52■■□□□ 1.84
CTDNEP1O95476 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CTDNEP1O95476 C9orf163-202ENST00000624034 2573 ntBASIC26.52■■□□□ 1.84
CTDNEP1O95476 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
CTDNEP1O95476 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
CTDNEP1O95476 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CTDNEP1O95476 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
CTDNEP1O95476 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.51■■□□□ 1.83
CTDNEP1O95476 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CTDNEP1O95476 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.51■■□□□ 1.83
CTDNEP1O95476 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CTDNEP1O95476 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CTDNEP1O95476 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CTDNEP1O95476 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CTDNEP1O95476 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.5■■□□□ 1.83
CTDNEP1O95476 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC26.5■■□□□ 1.83
CTDNEP1O95476 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CTDNEP1O95476 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.49■■□□□ 1.83
CTDNEP1O95476 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CTDNEP1O95476 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.49■■□□□ 1.83
CTDNEP1O95476 AC133561.1-201ENST00000568600 2415 ntBASIC26.49■■□□□ 1.83
CTDNEP1O95476 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CTDNEP1O95476 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.49■■□□□ 1.83
CTDNEP1O95476 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
CTDNEP1O95476 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.49■■□□□ 1.83
CTDNEP1O95476 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CTDNEP1O95476 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
CTDNEP1O95476 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CTDNEP1O95476 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC26.48■■□□□ 1.83
CTDNEP1O95476 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
CTDNEP1O95476 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.48■■□□□ 1.83
CTDNEP1O95476 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CTDNEP1O95476 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
CTDNEP1O95476 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.47■■□□□ 1.83
CTDNEP1O95476 AC068473.5-201ENST00000616428 2072 ntBASIC26.47■■□□□ 1.83
CTDNEP1O95476 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.47■■□□□ 1.83
CTDNEP1O95476 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC26.47■■□□□ 1.83
CTDNEP1O95476 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CTDNEP1O95476 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CTDNEP1O95476 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.47■■□□□ 1.83
CTDNEP1O95476 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
CTDNEP1O95476 AC021242.3-201ENST00000607598 1377 ntBASIC26.46■■□□□ 1.83
CTDNEP1O95476 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CTDNEP1O95476 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.46■■□□□ 1.83
CTDNEP1O95476 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CTDNEP1O95476 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
CTDNEP1O95476 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CTDNEP1O95476 AC092068.2-201ENST00000590491 1708 ntBASIC26.45■■□□□ 1.83
CTDNEP1O95476 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.83
CTDNEP1O95476 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
CTDNEP1O95476 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
CTDNEP1O95476 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
CTDNEP1O95476 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.45■■□□□ 1.82
CTDNEP1O95476 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.45■■□□□ 1.82
CTDNEP1O95476 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CTDNEP1O95476 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CTDNEP1O95476 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CTDNEP1O95476 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CTDNEP1O95476 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
CTDNEP1O95476 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC26.44■■□□□ 1.82
CTDNEP1O95476 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms