Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-2A0A0B4J238 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TRAV1-2A0A0B4J238 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 AC090877.2-201ENST00000558441 1738 ntBASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-2A0A0B4J238 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 ESRRAP2-201ENST00000418437 1549 ntBASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 RAP2CP1-202ENST00000605179 643 ntBASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 AC016575.1-201ENST00000607026 382 ntBASIC19.83■□□□□ 0.77
TRAV1-2A0A0B4J238 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TRAV1-2A0A0B4J238 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 AC242852.2-201ENST00000615738 1807 ntBASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV1-2A0A0B4J238 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-2A0A0B4J238 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 AC026202.3-201ENST00000600805 1127 ntBASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 AC007029.1-201ENST00000604183 313 ntBASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
TRAV1-2A0A0B4J238 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV1-2A0A0B4J238 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV1-2A0A0B4J238 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV1-2A0A0B4J238 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms