Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.78■□□□□ 0.6
ABCA3Q99758 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA3Q99758 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
ABCA3Q99758 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
ABCA3Q99758 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
ABCA3Q99758 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 RN7SL846P-201ENST00000467429 292 ntBASIC18.77■□□□□ 0.6
ABCA3Q99758 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA3Q99758 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC18.77■□□□□ 0.6
ABCA3Q99758 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC18.77■□□□□ 0.6
ABCA3Q99758 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
ABCA3Q99758 MIR6074-201ENST00000612054 107 ntBASIC18.77■□□□□ 0.6
ABCA3Q99758 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC18.77■□□□□ 0.6
ABCA3Q99758 PSME2-217ENST00000615264 874 ntTSL 5 BASIC18.77■□□□□ 0.6
ABCA3Q99758 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
ABCA3Q99758 PSME2-218ENST00000630027 185 ntTSL 3 BASIC18.77■□□□□ 0.6
ABCA3Q99758 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
ABCA3Q99758 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA3Q99758 AC064850.1-201ENST00000413279 1398 ntBASIC18.77■□□□□ 0.6
ABCA3Q99758 AL109954.1-202ENST00000564051 2148 ntBASIC18.77■□□□□ 0.6
ABCA3Q99758 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.77■□□□□ 0.6
ABCA3Q99758 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ABCA3Q99758 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.77■□□□□ 0.59
ABCA3Q99758 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
ABCA3Q99758 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
ABCA3Q99758 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
ABCA3Q99758 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
ABCA3Q99758 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.77■□□□□ 0.59
ABCA3Q99758 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
ABCA3Q99758 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
ABCA3Q99758 RPSAP70-201ENST00000504462 864 ntBASIC18.77■□□□□ 0.59
ABCA3Q99758 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC18.77■□□□□ 0.59
ABCA3Q99758 LY6E-215ENST00000523847 427 ntTSL 3 BASIC18.77■□□□□ 0.59
ABCA3Q99758 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC18.77■□□□□ 0.59
ABCA3Q99758 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
ABCA3Q99758 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
ABCA3Q99758 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.77■□□□□ 0.59
ABCA3Q99758 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ABCA3Q99758 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
ABCA3Q99758 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ABCA3Q99758 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC18.76■□□□□ 0.59
ABCA3Q99758 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC18.76■□□□□ 0.59
ABCA3Q99758 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC18.76■□□□□ 0.59
ABCA3Q99758 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC18.76■□□□□ 0.59
ABCA3Q99758 AC079250.1-201ENST00000456046 531 ntBASIC18.76■□□□□ 0.59
ABCA3Q99758 RNA5SP420-201ENST00000516997 137 ntBASIC18.76■□□□□ 0.59
ABCA3Q99758 AL512310.5-201ENST00000551999 515 ntBASIC18.76■□□□□ 0.59
ABCA3Q99758 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC18.76■□□□□ 0.59
ABCA3Q99758 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC18.76■□□□□ 0.59
ABCA3Q99758 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
ABCA3Q99758 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC18.76■□□□□ 0.59
ABCA3Q99758 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ABCA3Q99758 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
ABCA3Q99758 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA3Q99758 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA3Q99758 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 AC091951.1-201ENST00000512854 2465 ntBASIC18.75■□□□□ 0.59
ABCA3Q99758 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 MPV17-209ENST00000405983 859 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 MED15P3-201ENST00000413613 326 ntBASIC18.75■□□□□ 0.59
ABCA3Q99758 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC18.75■□□□□ 0.59
ABCA3Q99758 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC18.75■□□□□ 0.59
ABCA3Q99758 B9D1-206ENST00000461069 923 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA3Q99758 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC18.75■□□□□ 0.59
ABCA3Q99758 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA3Q99758 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC18.75■□□□□ 0.59
ABCA3Q99758 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
ABCA3Q99758 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ABCA3Q99758 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC18.75■□□□□ 0.59
ABCA3Q99758 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms