Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 AHCYP2-201ENST00000430630 1300 ntBASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SHROOM3Q8TF72 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CHMP1AP1-201ENST00000445563 662 ntBASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 TMBIM7P-202ENST00000641474 1516 ntBASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 AC027601.3-201ENST00000622907 509 ntBASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHROOM3Q8TF72 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 AC064801.2-201ENST00000625052 1303 ntBASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 AL645933.1-201ENST00000440087 609 ntBASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 AL096828.3-201ENST00000615354 462 ntBASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 KRT8P19-201ENST00000551916 1455 ntBASIC14.93□□□□□ -0.02
SHROOM3Q8TF72 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms