Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 AC004837.1-201ENST00000446267 564 ntBASIC16.8■□□□□ 0.28
HMGCS2P54868 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.8■□□□□ 0.28
HMGCS2P54868 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 AC138701.2-201ENST00000553634 226 ntBASIC16.8■□□□□ 0.28
HMGCS2P54868 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.8■□□□□ 0.28
HMGCS2P54868 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HMGCS2P54868 AL591471.1-201ENST00000621855 229 ntBASIC16.8■□□□□ 0.28
HMGCS2P54868 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGCS2P54868 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGCS2P54868 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGCS2P54868 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGCS2P54868 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGCS2P54868 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 OR8T1P-201ENST00000421347 918 ntBASIC16.79■□□□□ 0.28
HMGCS2P54868 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGCS2P54868 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HMGCS2P54868 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGCS2P54868 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
HMGCS2P54868 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
HMGCS2P54868 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGCS2P54868 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGCS2P54868 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGCS2P54868 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGCS2P54868 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGCS2P54868 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGCS2P54868 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 AC073347.1-201ENST00000421633 2643 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 BRD7P5-201ENST00000299197 1822 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGCS2P54868 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.78■□□□□ 0.28
HMGCS2P54868 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGCS2P54868 MIR645-201ENST00000385283 94 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 AL512306.1-201ENST00000432698 848 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 AC092638.2-201ENST00000441105 947 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 RPL18AP8-201ENST00000486071 528 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGCS2P54868 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.78■□□□□ 0.28
HMGCS2P54868 HERC2P11-201ENST00000562845 725 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 AC100756.2-201ENST00000569537 736 ntBASIC16.78■□□□□ 0.28
HMGCS2P54868 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGCS2P54868 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGCS2P54868 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.78■□□□□ 0.28
HMGCS2P54868 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGCS2P54868 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGCS2P54868 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms