Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC17.82■□□□□ 0.44
NUP98P52948 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.82■□□□□ 0.44
NUP98P52948 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.82■□□□□ 0.44
NUP98P52948 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
NUP98P52948 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
NUP98P52948 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC17.82■□□□□ 0.44
NUP98P52948 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.82■□□□□ 0.44
NUP98P52948 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.82■□□□□ 0.44
NUP98P52948 RN7SL767P-201ENST00000493013 295 ntBASIC17.82■□□□□ 0.44
NUP98P52948 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NUP98P52948 AC093909.3-201ENST00000504783 336 ntBASIC17.82■□□□□ 0.44
NUP98P52948 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
NUP98P52948 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC17.82■□□□□ 0.44
NUP98P52948 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NUP98P52948 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.82■□□□□ 0.44
NUP98P52948 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NUP98P52948 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC17.81■□□□□ 0.44
NUP98P52948 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.81■□□□□ 0.44
NUP98P52948 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
NUP98P52948 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
NUP98P52948 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
NUP98P52948 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.81■□□□□ 0.44
NUP98P52948 GCSHP3-201ENST00000431120 391 ntBASIC17.81■□□□□ 0.44
NUP98P52948 RN7SL23P-201ENST00000484055 275 ntBASIC17.81■□□□□ 0.44
NUP98P52948 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
NUP98P52948 AL512310.5-201ENST00000551999 515 ntBASIC17.81■□□□□ 0.44
NUP98P52948 AC138466.4-201ENST00000623965 852 ntBASIC17.81■□□□□ 0.44
NUP98P52948 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.81■□□□□ 0.44
NUP98P52948 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC17.81■□□□□ 0.44
NUP98P52948 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.81■□□□□ 0.44
NUP98P52948 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.81■□□□□ 0.44
NUP98P52948 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NUP98P52948 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NUP98P52948 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.8■□□□□ 0.44
NUP98P52948 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NUP98P52948 CICP24-201ENST00000605464 2705 ntBASIC17.8■□□□□ 0.44
NUP98P52948 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC17.8■□□□□ 0.44
NUP98P52948 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
NUP98P52948 RN7SL556P-201ENST00000582856 298 ntBASIC17.8■□□□□ 0.44
NUP98P52948 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 AC091769.1-201ENST00000619576 568 ntBASIC17.8■□□□□ 0.44
NUP98P52948 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NUP98P52948 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
NUP98P52948 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
NUP98P52948 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
NUP98P52948 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
NUP98P52948 GOLGA8UP-201ENST00000527159 1755 ntBASIC17.8■□□□□ 0.44
NUP98P52948 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NUP98P52948 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
NUP98P52948 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
NUP98P52948 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NUP98P52948 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
NUP98P52948 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
NUP98P52948 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
NUP98P52948 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
NUP98P52948 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.79■□□□□ 0.44
NUP98P52948 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms