Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CACNA1FO60840 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CACNA1FO60840 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CACNA1FO60840 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC18.1■□□□□ 0.49
CACNA1FO60840 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 TMCO5B-205ENST00000530020 894 ntBASIC18.1■□□□□ 0.49
CACNA1FO60840 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 MIR4522-201ENST00000584932 87 ntBASIC18.1■□□□□ 0.49
CACNA1FO60840 HCG18-245ENST00000602550 559 ntTSL 4 BASIC18.1■□□□□ 0.49
CACNA1FO60840 MIR6769A-201ENST00000617340 73 ntBASIC18.1■□□□□ 0.49
CACNA1FO60840 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CACNA1FO60840 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CACNA1FO60840 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.1■□□□□ 0.49
CACNA1FO60840 ORAOV1P1-201ENST00000503108 395 ntBASIC18.1■□□□□ 0.49
CACNA1FO60840 CHCHD2P2-201ENST00000503744 321 ntBASIC18.1■□□□□ 0.49
CACNA1FO60840 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.1■□□□□ 0.49
CACNA1FO60840 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC18.1■□□□□ 0.49
CACNA1FO60840 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
CACNA1FO60840 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CACNA1FO60840 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.09■□□□□ 0.49
CACNA1FO60840 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CACNA1FO60840 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC18.09■□□□□ 0.49
CACNA1FO60840 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CACNA1FO60840 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC18.09■□□□□ 0.49
CACNA1FO60840 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.09■□□□□ 0.49
CACNA1FO60840 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.09■□□□□ 0.49
CACNA1FO60840 AC026320.2-201ENST00000434379 478 ntBASIC18.09■□□□□ 0.49
CACNA1FO60840 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.09■□□□□ 0.49
CACNA1FO60840 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CACNA1FO60840 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 AC007952.5-201ENST00000572818 1486 ntBASIC18.09■□□□□ 0.49
CACNA1FO60840 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1FO60840 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CACNA1FO60840 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.08■□□□□ 0.49
CACNA1FO60840 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.08■□□□□ 0.49
CACNA1FO60840 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CACNA1FO60840 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC18.08■□□□□ 0.49
CACNA1FO60840 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.08■□□□□ 0.49
CACNA1FO60840 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.08■□□□□ 0.49
CACNA1FO60840 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC18.08■□□□□ 0.49
CACNA1FO60840 MIR2392-201ENST00000584881 84 ntBASIC18.08■□□□□ 0.49
CACNA1FO60840 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.08■□□□□ 0.49
CACNA1FO60840 AC007718.1-201ENST00000621078 280 ntBASIC18.08■□□□□ 0.49
CACNA1FO60840 AC068587.10-201ENST00000641210 219 ntBASIC18.08■□□□□ 0.49
CACNA1FO60840 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1FO60840 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CACNA1FO60840 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1FO60840 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC18.08■□□□□ 0.48
CACNA1FO60840 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC18.08■□□□□ 0.48
CACNA1FO60840 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1FO60840 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1FO60840 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC18.08■□□□□ 0.48
CACNA1FO60840 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1FO60840 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms