Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 Z98259.2-201ENST00000641583 609 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 CICP4-201ENST00000447359 2812 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 LILRP1-201ENST00000444199 1370 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 AC104581.4-201ENST00000623126 3052 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 HSPA7-201ENST00000445535 1927 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 AKR7A2P1-201ENST00000460134 915 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 SCARNA20.5-201ENST00000516991 142 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 AC022748.3-201ENST00000621828 275 ntBASIC14.07□□□□□ -0.16
CCDC88CQ9P219 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC88CQ9P219 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC138028.6-201ENST00000616106 1482 ntBASIC14.06□□□□□ -0.16
CCDC88CQ9P219 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AP000593.2-201ENST00000542775 1433 ntBASIC14.06□□□□□ -0.16
CCDC88CQ9P219 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 CHMP4BP1-201ENST00000556017 588 ntBASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC091271.1-201ENST00000611877 1162 ntBASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC068587.8-201ENST00000641239 219 ntBASIC14.06□□□□□ -0.16
CCDC88CQ9P219 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 AC015818.8-201ENST00000587907 1519 ntBASIC14.06□□□□□ -0.16
CCDC88CQ9P219 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC88CQ9P219 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 EIF4HP1-201ENST00000453115 687 ntBASIC14.05□□□□□ -0.16
CCDC88CQ9P219 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC88CQ9P219 AL160314.3-201ENST00000556041 767 ntBASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms