Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 TMEM198B-204ENST00000484016 896 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 LINC01783-202ENST00000614408 828 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 BX284668.2-205ENST00000619677 828 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 FAM90A2P-201ENST00000511144 1395 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 FAM90A25P-201ENST00000528404 1395 ntBASIC16.48■□□□□ 0.23
COL20A1Q9P218 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL20A1Q9P218 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
COL20A1Q9P218 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AP001267.2-201ENST00000532619 2086 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 RPS9P1-201ENST00000419943 583 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 FTLP1-201ENST00000449155 526 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 RN7SL277P-201ENST00000481521 288 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 AC008723.1-201ENST00000506922 207 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 MIR4722-201ENST00000578292 60 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AC018635.2-201ENST00000608625 364 ntBASIC16.47■□□□□ 0.23
COL20A1Q9P218 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL20A1Q9P218 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
COL20A1Q9P218 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 AC006480.2-201ENST00000609770 1337 ntBASIC16.46■□□□□ 0.23
COL20A1Q9P218 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 MIR557-201ENST00000385239 98 ntBASIC16.46■□□□□ 0.23
COL20A1Q9P218 AL627231.1-201ENST00000394467 1125 ntBASIC16.46■□□□□ 0.23
COL20A1Q9P218 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL20A1Q9P218 FXNP2-201ENST00000411625 547 ntBASIC16.46■□□□□ 0.23
COL20A1Q9P218 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.46■□□□□ 0.23
COL20A1Q9P218 RPSAP15-201ENST00000448168 861 ntBASIC16.46■□□□□ 0.23
COL20A1Q9P218 DUX4L50-201ENST00000455245 715 ntBASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms