Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 FAM86LP-201ENST00000478302 853 ntBASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 BX539320.1-201ENST00000623759 877 ntBASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 AC015688.4-201ENST00000580780 1647 ntBASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC28BQ9BUN5 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AC027369.6-201ENST00000525520 931 ntBASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AC131206.1-201ENST00000538078 1211 ntBASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC28BQ9BUN5 MIR3687-2-201ENST00000577708 61 ntBASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms