Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 RPSAP31-201ENST00000416648 895 ntBASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AC242376.2-201ENST00000619355 883 ntBASIC14.75□□□□□ -0.05
HMGB4Q8WW32 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 TMBIM7P-202ENST00000641474 1516 ntBASIC14.75□□□□□ -0.05
HMGB4Q8WW32 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB4Q8WW32 SSR4P1-203ENST00000599569 2260 ntBASIC14.75□□□□□ -0.05
HMGB4Q8WW32 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AL512430.1-201ENST00000392575 860 ntBASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AP000358.1-201ENST00000456260 156 ntBASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AP002803.1-201ENST00000528836 498 ntBASIC14.74□□□□□ -0.05
HMGB4Q8WW32 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 FOS-204ENST00000554617 796 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.74□□□□□ -0.05
HMGB4Q8WW32 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 TMBIM7P-203ENST00000641617 1718 ntBASIC14.74□□□□□ -0.05
HMGB4Q8WW32 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB4Q8WW32 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGB4Q8WW32 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB4Q8WW32 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB4Q8WW32 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGB4Q8WW32 AL136172.1-201ENST00000598590 1394 ntBASIC14.73□□□□□ -0.05
HMGB4Q8WW32 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
HMGB4Q8WW32 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms